| 1号谢长廷、苏贞昌 得票总数:5,445,239(41.55%) | 各县市得票数
| 县市 | 票数 | 得票率 | | 台北市 | 593,256 | 36.97% | | 高雄市 | 440,367 | 48.41% | | 基隆市 | 72,562 | 32.27% | | 新竹市 | 79,634 | 35.30% | | 台中市 | 226,751 | 38.26% | | 嘉义市 | 72,442 | 47.61% | | 台南市 | 216,815 | 49.29% | | 宜兰县 | 123,700 | 48.58% | | 台北县 | 867,205 | 38.95% | | 桃园县 | 379,416 | 35.36% | | 新竹县 | 73,178 | 25.98% | | 苗栗县 | 92,795 | 29.01% | | 台中县 | 353,706 | 41.16% | | 南投县 | 109,955 | 37.97% | | 彰化县 | 309,134 | 42.41% | | 云林县★ | 199,558 | 51.53% | | 嘉义县★ | 166,833 | 54.44% | | 台南县★ | 354,409 | 56.15% | | 高雄县★ | 373,900 | 51.41% | | 屏东县★ | 249,795 | 50.25% | | 台东县 | 29,714 | 26.68% | | 花莲县 | 40,003 | 22.52% | | 澎湖县 | 18,181 | 42.07% | | 金门县 | 1,710 | 4.87% | | 连江县 | 220 | 4.84% | | |
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| | 2号马英九、萧万长 得票总数:7,658,724(58.45%) | 各县市得票数
| 县市 | 票数 | 得票率 | | 台北市★ | 1,011,546 | 63.03% | | 高雄市★ | 469,252 | 51.59% | | 基隆市★ | 152,327 | 67.73% | | 新竹市★ | 145,930 | 64.70% | | 台中市★ | 365,979 | 61.74% | | 嘉义市★ | 79,713 | 52.39% | | 台南市★ | 223,034 | 50.71% | | 宜兰县★ | 130,951 | 51.42% | | 台北县★ | 1,359,129 | 61.05% | | 桃园县★ | 693,602 | 64.64% | | 新竹县★ | 208,445 | 74.02% | | 苗栗县★ | 227,069 | 70.99% | | 台中县★ | 505,698 | 58.84% | | 南投县★ | 179,630 | 62.03% | | 彰化县★ | 419,700 | 57.59% | | 云林县 | 187,705 | 48.47% | | 嘉义县 | 139,603 | 45.56% | | 台南县 | 276,751 | 43.85% | | 高雄县 | 353,333 | 48.59% | | 屏东县 | 247,305 | 49.75% | | 台东县★ | 81,668 | 73.32% | | 花莲县★ | 137,604 | 77.48% | | 澎湖县★ | 25,037 | 57.93% | | 金门县★ | 33,384 | 95.13% | | 连江县★ | 4,329 | 95.16% | | |
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